Sun Kun >> Software

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Published models, software, and resources
    Click to see hosted projects on Github

    Cancer diagnostic models


  • EXCEL: EXamination of Cell-free DNA with End seLection


    • Long intergenic noncoding RNA (lincRNA) analysis


  • iSeeRNA: accurate and extra-fast lincRNA/mRNA classifier


  • Sebnif: comprehensive novel lincRNA filter pipeline for RNA-seq data


  • NAMS: Noncoding Assessment of long RNAs in Magnoliophyta Species


    • Bisulfite sequencing (BS-seq) data analysis


  • Msuite/Msuite2: high-performance and versatile toolkit for various protocols


  • Methy-Pipe: integrated pipeline for BS-seq data analysis


  • BSviewer: lightweight nucleotide-level visualizer for bisulfite sequencing data


    • CfDNA analysis for Noninvasive prenatal testing and cancer diagnosis


  • Freefly: rapid and unbiased cfDNA fragmentomic profiling


  • COFFEE: control-free and cross-platform algorithm for T21 test


  • FEMER: noninvasive reconstruction of placental methylome


    • Others


  • Microcket: rapid and versatile toolkit for 3D genomic data analysis


  • Ktrim: extra-fast and accurate adapter- and quality-trimmer for NGS data


  • GeneCT: Generalizable cancerous-status and tissue origin classifier for tissue biopsies


  • ODS: the Online Diagnosis System for Sanger sequencing based genetic testing


  • mTFkb: fundamental annotation of mouse transcription factors